PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0079s0046.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 284aa    MW: 31287.3 Da    PI: 6.9662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0079s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18135185255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+ +g  +r++lg++ t  eAa+a+++a+ +l+g
  Kalax.0079s0046.1.p 135 HYRGVRQRP-WGKFAAEIRDPKRRG--ARVWLGTYETDVEAARAYDRAAFELRG 185
                          7********.**********96554..**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-31134194IPR001471AP2/ERF domain
CDDcd000184.22E-28135193No hitNo description
PfamPF008477.4E-14135185IPR001471AP2/ERF domain
PROSITE profilePS5103223.868135193IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22135195IPR016177DNA-binding domain
SMARTSM003802.4E-36135199IPR001471AP2/ERF domain
PRINTSPR003677.5E-13136147IPR001471AP2/ERF domain
PRINTSPR003677.5E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MFDLKISYHI FSQYSAPATV SMAAAADFSA LQLIKQHLFD GLASPLLKPD PSASQTQMAQ  60
IPDSLELDGV YTSLVSSDLG AVDLARRKPS VSSRKPALNI SLPSKTEWNE YAEPTQPQLA  120
AAASKPAPKR SDRRHYRGVR QRPWGKFAAE IRDPKRRGAR VWLGTYETDV EAARAYDRAA  180
FELRGCKAIL NFPLELAQSM DEPPAVGVRR LRSEAEERPE AKKVKTEEEV DGVNETALTP  240
SSWTAFWDFD DNGNTKSNGM LDWPSTSPLS PHPALGYSQL IVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28134196466ATERF1
3gcc_A2e-28134196466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275423.16e-60PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotO803411e-53EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A067L5Z53e-59A0A067L5Z5_JATCU; Uncharacterized protein
STRINGBra024953.1-P5e-52(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-53ethylene responsive element binding factor 5